clusterIdentification: Cluster identification

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Cluster identification

Description

This function executes a ubuntu docker that normalize all the permutation finding the rispective number of cluster respect the main clustering, the P0

Usage

clusterIdentification(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  nCluster,
  separator
)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
file	a character string indicating the path of the file, with file name and extension included
nCluster	which nCluster ins interesting to use for this analysis
separator	separator used in count file, e.g. '\t', ','

Value

Csv file with correct cluster name

Author(s)

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
 clusterIdentification(group,scratch.folder,file,nCluster,separator)#

## End(Not run)

kendomaniac/rCASC documentation built on July 3, 2024, 6:05 a.m.