gene_manhattan_plot: Make gene Manhattan plot

In kevinlkx/Mapgen: Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping

Make gene Manhattan plot

Description

Make gene Manhattan plot

Usage

gene_manhattan_plot(
  gene.pip.res,
  chr = "chr",
  pos = "pos",
  gene_name = "gene_name",
  gene_pip = "gene_pip",
  gene.pip.thresh = 0.8,
  highlight = TRUE,
  ylim = 1.2,
  point.size = 2,
  label.size = point.size * 2,
  font.size = 15,
  max.overlaps = 20,
  title = ""
)

Arguments

gene.pip.res	Gene mapping result
chr	Name of the chr column in the gene mapping result
pos	Name of the pos column in the gene mapping result
gene_name	Name of the gene name column in the gene mapping result
gene_pip	Name of the gene PIP column in the gene gene mapping result
gene.pip.thresh	Gene PIP cutoff (default: 0.8)
highlight	Highlight genes with gene PIP > gene.pip.thresh
ylim	Truncate gene PIP to ylim value in the plot.
point.size	Size of the points.
label.size	Size of the labels.
font.size	Font size of the text.
max.overlaps	Exclude text labels that overlap too many things.
title	Title of the plot

kevinlkx/Mapgen documentation built on April 2, 2024, 5:48 a.m.