partition_pip_annots: Partition PIPs into functional annotation categories.
In kevinlkx/Mapgen: Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping
View source: R/partition_pips.R
partition_pip_annots R Documentation
Partition PIPs into functional annotation categories.
Description
Partition PIPs into functional annotation categories.
Usage
partition_pip_annots(finemapstats, annots.list)
Arguments
finemapstats
a GRanges object of fine mapping summary statistics
annots.list
a list of GRanges objects of ordered functional annotation categories,
if a SNP is in multiple annotation categories,
it will be assigned to the first ordered category.
Value
a list with a data frame with the sum of PIPs and
a data frame with the number of SNPs included for each annotation category.
kevinlkx/Mapgen documentation built on April 2, 2024, 5:48 a.m.
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View source: R/partition_pips.R
| partition_pip_annots | R Documentation |
Partition PIPs into functional annotation categories.
Description
Partition PIPs into functional annotation categories.
Usage
partition_pip_annots(finemapstats, annots.list)
Arguments
finemapstats |
a GRanges object of fine mapping summary statistics |
annots.list |
a list of GRanges objects of ordered functional annotation categories, if a SNP is in multiple annotation categories, it will be assigned to the first ordered category. |
Value
a list with a data frame with the sum of PIPs and a data frame with the number of SNPs included for each annotation category.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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