getMatches: Searches a given set of genomic ranges for the motifs...

In kewiechecki/tfenrichr: Enrichment tests for transcription factor binding sites.

Searches a given set of genomic ranges for the motifs returned by mergeMotifs. The background frequency is obtained from the total nucleotide frequencies in peaks.

Description

Searches a given set of genomic ranges for the motifs returned by mergeMotifs. The background frequency is obtained from the total nucleotide frequencies in peaks.

Usage

getMatches(peaks, genome, out = "positions", motifs = CrobustaMotifs, ...)

Arguments

peaks	A GenomicRanges or other subject input for matchMotifs.
genome	A BSgenome object or other genome input for matchMotifs.
out	Type of output to return.
motifs	A PWMatrixList.
...	Additional arguments to matchMotifs()

Value

A matches object.

See Also

mergeMotifs, motifmatchr::matchMotifs

kewiechecki/tfenrichr documentation built on June 10, 2025, 12:15 a.m.