matchPois: Accepts a vector of peak IDs, and performs a Poisson test for...

In kewiechecki/tfenrichr: Enrichment tests for transcription factor binding sites.

Accepts a vector of peak IDs, and performs a Poisson test for enrichmet of motifs in peaks versus a background of all elements in matches.

Description

Accepts a vector of peak IDs, and performs a Poisson test for enrichmet of motifs in peaks versus a background of all elements in matches.

Usage

matchPois(peaks, matches, padj.method = "fdr", allow.duplicates = F)

Arguments

peaks	A character vector of peak IDs corresponding to the row.names of matches.
matches	An output from motifmatchr::matchMotifs.
padj.method	The method to be used by p.adjust().
allow.duplicates	Whether to remove duplicates from peaks.

Value

A data.frame containing the test results.

See Also

getMatches, motifmatchr::matchMotifs

kewiechecki/tfenrichr documentation built on June 10, 2025, 12:15 a.m.