rmdup: Accepts a PWMatrixList and an output from...
In kewiechecki/tfenrichr: Enrichment tests for transcription factor binding sites.
rmdup R Documentation
Accepts a PWMatrixList and an output from motifmatchr::matchMotifs, and removes rows from the output corresponding to duplicate motif IDs.
Only the row with the greatest number of matches is left for each motif ID.
The background frequency is obtained from the total nucleotide frequencies in peaks.
Description
Accepts a PWMatrixList and an output from motifmatchr::matchMotifs, and removes rows from the output corresponding to duplicate motif IDs.
Only the row with the greatest number of matches is left for each motif ID.
The background frequency is obtained from the total nucleotide frequencies in peaks.
Usage
rmdup(motifs, matches, metric = "matches")
Arguments
motifs
The PWMatrixList used to compute matches.
matches
An output from motifmatchr::matchMotifs.
out
Type of output to return.
Value
A matches object.
See Also
getMatches, motifmatchr::matchMotifs
kewiechecki/tfenrichr documentation built on June 10, 2025, 12:15 a.m.
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| rmdup | R Documentation |
Accepts a PWMatrixList and an output from motifmatchr::matchMotifs, and removes rows from the output corresponding to duplicate motif IDs. Only the row with the greatest number of matches is left for each motif ID. The background frequency is obtained from the total nucleotide frequencies in peaks.
Description
Accepts a PWMatrixList and an output from motifmatchr::matchMotifs, and removes rows from the output corresponding to duplicate motif IDs. Only the row with the greatest number of matches is left for each motif ID. The background frequency is obtained from the total nucleotide frequencies in peaks.
Usage
rmdup(motifs, matches, metric = "matches")
Arguments
motifs |
The PWMatrixList used to compute matches. |
matches |
An output from motifmatchr::matchMotifs. |
out |
Type of output to return. |
Value
A matches object.
See Also
getMatches, motifmatchr::matchMotifs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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