get_var_genes: Get Variable Genes
In kgellatl/SignalCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)
Description
Usage
Arguments
Examples
View source: R/get_var_genes.R
Description
This will get the variable genes above a threshold, based on quantile.
Usage
1
get_var_genes(input, method, cutoff)
Arguments
input
the input sce
method
One of "CV", "Malhanobis", or "Gini
cutoff
The threshold below which a gene will not be returned. Expressed as decimal.
Examples
1
sce <- get_def_assay(sce)
kgellatl/SignalCell documentation built on Sept. 3, 2020, 8:45 a.m.
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Description Usage Arguments Examples
View source: R/get_var_genes.R
Description
This will get the variable genes above a threshold, based on quantile.
Usage
1 | get_var_genes(input, method, cutoff)
|
Arguments
input |
the input sce |
method |
One of "CV", "Malhanobis", or "Gini |
cutoff |
The threshold below which a gene will not be returned. Expressed as decimal. |
Examples
1 | sce <- get_def_assay(sce)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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