plot_metadata: Plot on metadata

In kgellatl/SignalCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

Description

This will plot information onto a 2d plot

Usage

plot_metadata(
  input,
  color_by,
  facet_by = NULL,
  coords = NULL,
  title = NULL,
  colors = NULL,
  size = 1.5,
  ncol = 2,
  legend_dot_size = 1.5,
  text_sizes = c(20, 10, 5, 10, 5, 5),
  shuffle = T,
  xlab = "x",
  ylab = "y"
)

Arguments

input	the input ex_sc.
color_by	What to color points by, either "UMI_sum", or pData categorial variable, ignored if gene is provided
facet_by	What to break the plots by
coords	A vector of character lem, x, and u. See set_xy function. #' @param title The title
colors	What colors to utilize for categorial data. Be sure it is of the proper length!
size	The size of the points
ncol	How many columns if faceting
legend_dot_size	Size of dot in legend
text_sizes	the text sizes on the plot
xlab	character x label
ylab	character y label
theme	the ggplot theme
whether	or not to shuffle the matrix to prevent last plotted factor blocking rest

Details

Utilize information stored in pData to control the plot display.

Examples

plot_tsne_metadata(ex_sc_example, color_by = "UMI_sum", title = "UMI_sum across clusters", facet_by = "Cluster", ncol = 3)

kgellatl/SignalCell documentation built on Sept. 3, 2020, 8:45 a.m.