Files in kidcancerlab/rrrSingleCellUtils
A Set of Tools For Single Cell Analysis
.Rbuildignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/annotate.R
R/complexHeatmap.R
R/misc.R
R/multiomics.R
R/plotting.R
R/reductions.R
R/rrrSingleCellUtils-package.R
R/scIntercellular.R
R/scSeurat.R
R/silhouette.R
R/sysdata.rda
R/utils-pipe.R
R/velocity_analysis_functions.R
README.md
data-raw/genRawDataPlaceholders.R
exec/getCellectaBarcodes.pl
exec/parseGtfForAnnot.py
inst/exampleSampleInfoSheet.txt
inst/ltbc_example.bam
inst/make_environment.yml
inst/make_loom_files.sh
man/add_atac_metadata.Rd
man/add_nucleosome_signal.Rd
man/annotate_atac.Rd
man/annotate_celltypes.Rd
man/auto_subset.Rd
man/calc_frip.Rd
man/check_cmd.Rd
man/feature_hist.Rd
man/find_ligands.Rd
man/find_tar_genes.Rd
man/gen_cellecta_bc_data.Rd
man/gen_lig_receptor_ref.Rd
man/get_cell_cycle_genes.Rd
man/kill_cc.Rd
man/load_lig_receptor_data.Rd
man/merge_atac.Rd
man/merge_gex_atac.Rd
man/optimize_silhouette.Rd
man/pipe.Rd
man/plot_cc.Rd
man/plot_cols.Rd
man/plot_complex_heatmap.Rd
man/process_ltbc.Rd
man/process_seurat.Rd
man/process_seurat_atac.Rd
man/r_dim_plot.Rd
man/r_feature_plot.Rd
man/r_make_loom_files.Rd
man/rrrSingleCellUtils-package.Rd
man/run_fdl.Rd
man/silhouette_cluster_mean.Rd
man/silhouette_mean.Rd
man/silhouette_plot.Rd
man/silhouette_seurat.Rd
man/silhouette_to_df.Rd
man/tenx_load_qc.Rd
man/theme_roberts.Rd
man/tss_enrichment.Rd
man/use_sbatch_template.Rd
man/write_off_md.Rd
tests/testthat.R
tests/testthat/test-scSeurat.R
tests/testthat/test_10x_matrix/barcodes.tsv
tests/testthat/test_10x_matrix/genes.tsv
tests/testthat/test_10x_matrix/make_matrix_test_files.R
tests/testthat/test_10x_matrix/matrix.mtx
tests/testthat/test_10x_matrix/test.h5
tests/testthat/test_reductions.R
vignettes/basics.Rmd
vignettes/multiomics_analysis.Rmd
vignettes/rna_velo.qmd
