process_seurat_atac: Process a Seurat object with ATAC data

In kidcancerlab/rrrSingleCellUtils: A Set of Tools For Single Cell Analysis

Process a Seurat object with ATAC data

Description

FUNCTION_DESCRIPTION

Usage

process_seurat_atac(
  sobject,
  assay = "ATAC",
  verbose = FALSE,
  umap_dims = 2:30,
  resolution = 0.3,
  reduction = "lsi"
)

Arguments

sobject	Seurat object to be processed
assay	Assay that has the ATAC data
verbose	Should functions be verbose?
umap_dims	PCA dimensions to use for UMAP
resolution	Resolution to be used in FindClusters
reduction	What reduction to be used to generate umap

Value

A processed Seurat object

Examples

# ADD_EXAMPLES_HERE

kidcancerlab/rrrSingleCellUtils documentation built on April 17, 2025, 5:10 p.m.