silhouette_seurat: Perform silhouette scoring on a Seurat object.

In kidcancerlab/rrrSingleCellUtils: A Set of Tools For Single Cell Analysis

Perform silhouette scoring on a Seurat object.

Description

Perform silhouette scoring on a Seurat object.

Usage

silhouette_seurat(
  sobject,
  cluster_col = "seurat_clusters",
  dims = c(1:10),
  reduction = "pca"
)

Arguments

sobject	A Seurat object containing all of the cells for analysis (required)
cluster_col	A column name containing the cluster assignments for cells
dims	Numeric vector of PCA dimensions to use
reduction	The reduction data used (default is "pca").

Details

This function takes in a Seruat object and runs silhouette scoring

Value

A silhouette object

Examples

## Not run: 
sil <- silhouette_seurat(sobject = seurat_obj)

## End(Not run)

kidcancerlab/rrrSingleCellUtils documentation built on April 17, 2025, 5:10 p.m.