add_atac_metadata: Add ATAC specific metadata to the Seurat object
In kidcancerlab/rrrSingleCellUtils: A Set of Tools For Single Cell Analysis
add_atac_metadata R Documentation
Add ATAC specific metadata to the Seurat object
Description
Add nucleosome signal, TSS enrichment, and FRiP to a Seurat object
Usage
add_atac_metadata(
sobject,
gtf,
nucl_cutoff = 4,
tss_cutoff = 2,
frag_files,
verbose = TRUE
)
Arguments
sobject
Seurat object to be processed
gtf
String of path to a gtf file.
nucl_cutoff
Cutoff for nucleosome signal
tss_cutoff
Cutoff for TSS enrichment
frag_files
Named list of paths to fragment files.
verbose
Should functions be verbose?
Value
A Seurat object
kidcancerlab/rrrSingleCellUtils documentation built on April 17, 2025, 5:10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| add_atac_metadata | R Documentation |
Add ATAC specific metadata to the Seurat object
Description
Add nucleosome signal, TSS enrichment, and FRiP to a Seurat object
Usage
add_atac_metadata(
sobject,
gtf,
nucl_cutoff = 4,
tss_cutoff = 2,
frag_files,
verbose = TRUE
)
Arguments
sobject |
Seurat object to be processed |
gtf |
String of path to a gtf file. |
nucl_cutoff |
Cutoff for nucleosome signal |
tss_cutoff |
Cutoff for TSS enrichment |
frag_files |
Named list of paths to fragment files. |
verbose |
Should functions be verbose? |
Value
A Seurat object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.