merge_gex_atac: Merge GEX and ATAC data

In kidcancerlab/rrrSingleCellUtils: A Set of Tools For Single Cell Analysis

Merge GEX and ATAC data

Description

FUNCTION_DESCRIPTION

Usage

merge_gex_atac(
  gex_sobj,
  atac_sobj,
  atac_assay_name = "ATAC",
  gex_pca_dims = 1:dim(Seurat::Embeddings(gex_sobj))[2],
  atac_pca_dims = 1:dim(Seurat::Embeddings(atac_sobj, reduction = "lsi"))[2],
  verbose = FALSE
)

Arguments

gex_sobj	Seurat object with GEX data to be processed
atac_sobj	Seurat object with ATAC data to be processed
atac_assay_name	Name of the assay in atac_sobj that has the ATAC data
gex_pca_dims	GEX PCA dimensions to use for UMAP
atac_pca_dims	ATAC PCA dimensions to use for UMAP
verbose	Should functions be verbose?

Value

A processed Seurat object

Examples

# ADD_EXAMPLES_HERE

kidcancerlab/rrrSingleCellUtils documentation built on April 17, 2025, 5:10 p.m.