InTADSig: The InTADSig Class
In kokonech/InTAD: Search for correlation between epigenetic signals and gene expression in TADs
Description
The InTADSig object stores signals and gene expression data for the samples.
Details
It uses MultiAssayExperiment object to store information. Key slots to access
are listed below.
Slots
sigMAE:"MultiAssayExperiment",
MultiAssayExperiment object containg signals and gene counts
signalConnections:"list",
The list of signals representing gene data frames in the same TAD
loopsDf:"data.frame",
The data.frame containing details of provided input loops
loopConnections:"list",
The list of connections between signals and genes via loops
ncore:"numeric",
Number of cores to use for parallel computing
#'
kokonech/InTAD documentation built on Jan. 1, 2021, 9:23 p.m.
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Description
The InTADSig object stores signals and gene expression data for the samples.
Details
It uses MultiAssayExperiment object to store information. Key slots to access are listed below.
Slots
sigMAE:"MultiAssayExperiment", MultiAssayExperiment object containg signals and gene countssignalConnections:"list", The list of signals representing gene data frames in the same TADloopsDf:"data.frame", The data.frame containing details of provided input loopsloopConnections:"list", The list of connections between signals and genes via loopsncore:"numeric", Number of cores to use for parallel computing
#'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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