The package is focused on the detection of correlation between expressed genes and selected epigenomic signals i.e. enhancers obtained from ChIP-seq data within topologically associated domains (TADs). Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.
|Author||Konstantin Okonechnikov, Serap Erkek, Lukas Chavez|
|Bioconductor views||ChIPSeq Epigenetics GeneExpression HiC RNASeq Sequencing|
|Maintainer||Konstantin Okonechnikov <[email protected]>|
|Package repository||View on GitHub|
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