kokonech/InTAD: Search for correlation between epigenetic signals and gene expression in TADs

The package is focused on the detection of correlation between expressed genes and selected epigenomic signals i.e. enhancers obtained from ChIP-seq data within topologically associated domains (TADs). Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.

Getting started

Package details

AuthorKonstantin Okonechnikov, Serap Erkek, Lukas Chavez
Bioconductor views ChIPSeq Epigenetics GeneExpression HiC RNASeq Sequencing
MaintainerKonstantin Okonechnikov <[email protected]>
LicenseGPL (>=2)
Version1.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("kokonech/InTAD")
kokonech/InTAD documentation built on June 27, 2018, 9:38 a.m.