fnSE: Preparation for correlation analysis for a signal
In kokonech/InTAD: Search for correlation between epigenetic signals and gene expression in TADs

This function collects all genes for signal genomic region inside of Topologically Associated Domains (TADs)

1	fnSE(id, sigList, tadGR, tss, pickMaxOvlp, nearestTad)

`id`	Id of signal from the list
`sigList`	List of signal GRs and their names
`tadGR`	TAD genomic regions
`tss`	Gene transcription start sites
`pickMaxOvlp`	Use TAD with max overlap
`nearestTad`	The table listing TADs nearest to each TSS #'

The signal is checked if it is lying inside of TAD. Then all genes in this TAD are collected.

Data.frame containing genes connected to signal

kokonech/InTAD documentation built on Jan. 1, 2021, 9:23 p.m.

kokonech/InTAD index

README.md

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description