findCorFromLoops: Function to perfrom correlation analysis via loops.

In kokonech/InTAD: Search for correlation between epigenetic signals and gene expression in TADs

Description

This function combines genes and signals using obtained loop connections.

Usage

findCorFromLoops(object, method = "pearson", adj.pval = FALSE)

Arguments

object	InTADSig object with signals and genes combined via loops
method	Correlation method: "pearson" (default), "kendall", "spearman"
adj.pval	Perform p-value adjsutment and include q-values in result

Value

A table with correlation values for signal-gene pairs including correlation p-value and euclidian distance.

kokonech/InTAD documentation built on Jan. 1, 2021, 9:23 p.m.