mapSetKegg: Create KEGG map from object

In kroemerlab/GRMeta: Processing MetX data

Description

Create KEGG map from object

Usage

mapSetKegg(obj,outfile=NULL, cols=NULL,sizes=4,mixcol="grey70",ftsize=16,conv2pdf=FALSE)

Arguments

obj	metaboSet object
outfile	File to save
cols	Colors used for each method in the object
sizes	Relative size for each node
mixcol	If null, mixing colors is done for entries in several methods
ftsize	Size of the label
conv2pdf	Convert SVG to PDF with Inkscape: command line

Value

SVG text

Author(s)

David Enot [e-mail]

Examples

## Not run: 
(testfiles=list.files(system.file( package = "GRMeta"),pattern = "txt$",full.names = TRUE))
lcdata=loadAgilentData(ifile =testfiles[1],params = list(AssayName="lc"))
gcdata1=loadAgilentData(ifile =testfiles[2],params = list(AssayName="gc"))

finaldata=mergeSet(lcdata,gcdata1)
mapSetKegg(finaldata,outfile="myKegg.svg")


## End(Not run)

kroemerlab/GRMeta documentation built on March 25, 2020, 11:32 a.m.