Description Usage Arguments Author(s) See Also Examples
View source: R/paramsParsing.R
Default parameters for parsing Agilent text files.
1 2 3 4 | paramsParsing(AssayName = "myassay", FileCol = "Data File", TimeCol = "Acq. Date-Time",
ordering = TRUE, regTypes = "^([blBLQCcSTDstda]+)_.*", NameClean = c("_GCMRM",
"_MRM", "_DBAA"), checkNams = TRUE, Batch = NULL, nozeroscheck = NULL,
AnnotDB = AnnotationDB)
|
AssayName |
Name of the method |
FileCol |
Name of the file column |
TimeCol |
Name of the file column |
ordering |
Reorder according to sample type and date of analysis |
regTypes |
Regular expression to extract sample type |
NameClean |
Strings being replaced from the filename in addition to .d and .D |
checkNams |
Verify analyte names (default call of |
Batch |
Optional batch name for fileinfos |
nozeroscheck |
Optional vector of data matrices for which <=0 are not replace by NA. Default=NULL: all matrices will be checked |
AnnotDB |
Annotation DB: if null, load |
David Enot david.enot@gustaveroussy.fr
1 |
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