drawNetworkWithModules: Draw Network with Modules

Description Usage Arguments References

View source: R/drawNetworkWithModules.R

Description

Draw Network with Modules

Usage

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drawNetworkWithModules(graph, title, nodes, colors, save.image=TRUE,
close.cycnets.afterwards = FALSE)

Arguments

graph

an igraph object, which can be generated by generateNetwork.

title

a name for the Cytoscape session.

nodes

data.table with data containing the nodes. It is contained in the output list of identifyModules.

colors

a colour palette as returned from rainbow for colouring the different modules.

save.image

TRUE, if modules should be saved as png files.

close.cycnets.afterwards

TRUE, if the windows in the cytoscape environment should be closed after drawing. This might be useful repeated function call.

References

\insertRef

Shannon2003MoDentify

\insertRef

Smoot2011MoDentify

\insertRef

RCy3MoDentify


krumsieklab/MoDentify documentation built on March 24, 2021, 9:01 p.m.