getMergedModules: Get Module scores for Merged Modules

In krumsieklab/MoDentify: Phenotype-driven module identification

Description

Get Module scores for Merged Modules

Usage

getMergedModules(graph, data, phenotype, covars, nodes,
  scoringFunction = linearScoring)

Arguments

graph	an igraph object, which can be generated with generateNetwork. The ID of the nodes must correspond to the name of the variables.
data	either a matrix, where the columns correspond to the variables and the rows to the observations. Or a data.table with three columns: name, sampleID and value.
phenotype	a vector with the values for a phenotype of interest. It must have the same number of observations as in data.
covars	a data.table containing the covariates to correct for.
nodes	an igraph object, containing the information for the nodes and their new modules.
scoringFunction	a scoring function accepting parameters moduleRepresentatives, phenotype and covars. See linearScoring

krumsieklab/MoDentify documentation built on March 24, 2021, 9:01 p.m.