Files in krumsieklab/MoDentify

Phenotype-driven module identification

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

DESCRIPTION

NAMESPACE

NEWS

R/MoDentify.R R/aggregatedMean.R R/calculateModuleRepresentatives.R R/calculateModuleScore.R R/deleteDuplicate.R R/deleteSupergraphs.R R/drawModule.R R/drawModules.R R/drawNetworkWithModules.R R/eigenMetabolites.R R/generateNetwork.R R/generatePathwaysNetwork.R R/getMergedModules.R R/getNeighborsForModule.R R/getToMerge.R R/ggEdgesBetweenAttributes.R R/ggExplainedVariance.R R/greedyModuleSelection.R R/identifyModules.R R/linearScoring.R R/orderAnnotation.R R/writeModules.R README.md

data/qmdiab.annos.RData

data/qmdiab.data.RData

data/qmdiab.phenos.RData

inst/CITATION

inst/REFERENCES.bib

inst/extdata/qmdiab.annotations.txt

inst/extdata/qmdiab.network.txt

inst/figures/MoDentify_modules.png

inst/figures/MoDentify_pathway_modules.png

inst/figures/MoDentify_scheme.png

inst/script/getQmdiabData.R man/MoDentify-package.Rd man/aggregatedMean.Rd man/calculateModuleRepresentatives.Rd man/calculateModuleScore.Rd man/deleteDuplicates.Rd man/deleteSupergraphs.Rd man/drawModule.Rd man/drawModules.Rd man/drawNetworkWithModules.Rd man/eigenMetabolites.Rd man/generateNetwork.Rd man/generatePathwaysNetwork.Rd man/getMergedModules.Rd man/getNeighborsForModule.Rd man/getToMerge.Rd man/ggEdgesBetweenAttributes.Rd man/ggExplainedVariance.Rd man/greedyModuleSelection.Rd man/identifyModules.Rd man/linearScoring.Rd man/orderAnnotation.Rd man/qmdiab.annos.Rd man/qmdiab.data.Rd man/qmdiab.phenos.Rd man/writeModules.Rd tests/testthat.R tests/testthat/test_getNeighborsForModule.R tests/testthat/test_identifyModules.R vignettes/MoDentify.Rmd

krumsieklab/MoDentify documentation built on March 24, 2021, 9:01 p.m.