R/MoDentify.R

In krumsieklab/MoDentify: Phenotype-driven module identification

#' Phenotype-driven module identification
#'
#' @docType package
#' @references
#' \insertRef{Do2017}{MoDentify}
#'
#' \insertRef{Do2018}{MoDentify}
#' @import Rdpack
"_PACKAGE"
utils::globalVariables(c(
  "node2", "from", "node1", "to", "pval.adjust", "p", "cor",
  "ppear.adjust", "label", "Labels", ".", "z.score", "sampleID", "DF",
  "representative", "Fluid", "moduleID", "nodeID", "module.score", "net.graph",
  "order.added", "seed.score", "score.after.adding", "is.significant",
  "node.pval", "i.moduleID", "att1", "att2", "xmin", "xmax", "ymin", "ymax",
  "count", "principal.component.number", "explained.variance", "score",
  "key.value", "times.accessed", "name", "value", "s.id", "met.name",
  "module.beta", "module.pval", "module.pval.after.adding.node",
  "pearp.adjust", "pval", "adjusted.pval", "module.pval",
  "module.pval.after.adding.node"
),
package = "MoDentify", add = FALSE
)


#' qmdiab annotations
#' @docType data
#' @format a \code{\link[data.table]{data.table}} with 1524 rows and 14 variables
#' @usage data(qmdiab.annos)
"qmdiab.annos"

#' qmdiab data
#' @docType data
#' @format a \code{\link[data.table]{data.table}} with 310 rows and 1524 colums
#' @usage data(qmdiab.data)
"qmdiab.data"

#' qmdiab phenotypes
#' @docType data
#' @format a \code{\link[data.table]{data.table}} with 310 rows and 4 columns
#' @usage data(qmdiab.phenos)
"qmdiab.phenos"