API for kstreet13/slingshot
Tools for ordering single-cell sequencing

Global functions
.avg_curves	Source code
.cumMin	Source code
.getClusterLabels	Source code
.percent_shrinkage	Source code
.scaleAB	Source code
.shrink_to_avg	Source code
.under	Source code
SlingshotDataSet	Man page
SlingshotDataSet,PseudotimeOrdering-method	Man page
SlingshotDataSet,SingleCellExperiment-method	Man page
SlingshotDataSet,SlingshotDataSet-method	Man page
SlingshotDataSet-class	Man page
`.slingCurves<-`	Source code
`.slingParams<-`	Source code
as.PseudotimeOrdering	Man page
as.PseudotimeOrdering,PseudotimeOrdering-method	Man page
as.PseudotimeOrdering,SingleCellExperiment-method	Man page
as.PseudotimeOrdering,SlingshotDataSet-method	Man page
as.SlingshotDataSet	Man page
as.SlingshotDataSet,PseudotimeOrdering-method	Man page
as.SlingshotDataSet,SingleCellExperiment-method	Man page
as.SlingshotDataSet,SlingshotDataSet-method	Man page
embedCurves	Man page
embedCurves,PseudotimeOrdering,matrix-method	Man page
embedCurves,SingleCellExperiment,character-method	Man page
embedCurves,SingleCellExperiment,matrix-method	Man page
getCurves	Man page
getCurves,PseudotimeOrdering-method	Man page
getCurves,SingleCellExperiment-method	Man page
getCurves,SlingshotDataSet-method	Man page
getLineages	Man page
getLineages,PseudotimeOrdering,ANY-method	Man page
getLineages,SingleCellExperiment,ANY-method	Man page
getLineages,SlingshotDataSet,ANY-method	Man page
getLineages,data.frame,ANY-method	Man page
getLineages,matrix,ANY-method	Man page
getLineages,matrix,character-method	Man page
getLineages,matrix,factor-method	Man page
getLineages,matrix,matrix-method	Man page
getLineages,matrix,numeric-method	Man page
lines.SlingshotDataSet	Man page Source code
newSlingshotDataSet	Man page
newSlingshotDataSet,data.frame,ANY-method	Man page
newSlingshotDataSet,matrix,ANY-method	Man page
newSlingshotDataSet,matrix,character-method	Man page
newSlingshotDataSet,matrix,factor-method	Man page
newSlingshotDataSet,matrix,matrix-method	Man page
newSlingshotDataSet,matrix,numeric-method	Man page
pairs-SlingshotDataSet	Man page
pairs.SlingshotDataSet	Man page
plot,SlingshotDataSet,ANY-method	Man page
plot-SlingshotDataSet	Man page
plot.SlingshotDataSet	Man page Source code
plot3d-SlingshotDataSet	Man page
plot3d.SlingshotDataSet	Man page Source code
predict,PseudotimeOrdering-method	Man page
predict,SlingshotDataSet-method	Man page
reducedDim,SlingshotDataSet,ANY-method	Man page
reducedDims,SlingshotDataSet-method	Man page
show,SlingshotDataSet-method	Man page
slingAvgPseudotime	Man page
slingAvgPseudotime,ANY-method	Man page
slingBranchGraph	Man page
slingBranchGraph,ANY-method	Man page
slingBranchID	Man page
slingBranchID,ANY-method	Man page
slingClusterLabels	Man page
slingClusterLabels,PseudotimeOrdering-method	Man page
slingClusterLabels,SingleCellExperiment-method	Man page
slingClusterLabels,SlingshotDataSet-method	Man page
slingCurveWeights	Man page
slingCurveWeights,PseudotimeOrdering-method	Man page
slingCurveWeights,SingleCellExperiment-method	Man page
slingCurveWeights,SlingshotDataSet-method	Man page
slingCurves	Man page
slingCurves,PseudotimeOrdering-method	Man page
slingCurves,SingleCellExperiment-method	Man page
slingCurves,SlingshotDataSet-method	Man page
slingLineages	Man page
slingLineages,PseudotimeOrdering-method	Man page
slingLineages,SingleCellExperiment-method	Man page
slingLineages,SlingshotDataSet-method	Man page
slingMST	Man page
slingMST,PseudotimeOrdering-method	Man page
slingMST,SingleCellExperiment-method	Man page
slingMST,SlingshotDataSet-method	Man page
slingParams	Man page
slingParams,PseudotimeOrdering-method	Man page
slingParams,SingleCellExperiment-method	Man page
slingParams,SlingshotDataSet-method	Man page
slingPseudotime	Man page
slingPseudotime,PseudotimeOrdering-method	Man page
slingPseudotime,SingleCellExperiment-method	Man page
slingPseudotime,SlingshotDataSet-method	Man page
slingReducedDim	Man page
slingReducedDim,PseudotimeOrdering-method	Man page
slingReducedDim,SingleCellExperiment-method	Man page
slingReducedDim,SlingshotDataSet-method	Man page
slingshot	Man page
slingshot,ClusterExperiment,ANY-method	Man page
slingshot,SingleCellExperiment,ANY-method	Man page
slingshot,SlingshotDataSet,ANY-method	Man page
slingshot,data.frame,ANY-method	Man page
slingshot,matrix,ANY-method	Man page
slingshot,matrix,character-method	Man page
slingshot,matrix,factor-method	Man page
slingshot,matrix,matrix-method	Man page
slingshot,matrix,numeric-method	Man page
slingshotExample	Man page