API for kstreet13/slingshot
Tools for ordering single-cell sequencing

Global functions
SlingshotDataSet Man page
SlingshotDataSet-class Man page
SlingshotDataSet-plot Man page
SlingshotDataSet-plot3d Man page
[,SlingshotDataSet-method Man page
avg_curves Source code
clusterLabels Man page
clusterLabels,SlingshotDataSet-method Man page
clusterLabels<- Man page
clusterLabels<-,SlingshotDataSet-method Man page
connectivity Man page
connectivity,SlingshotDataSet-method Man page
cumMin Source code
curveControl Man page
curveControl,SlingshotDataSet-method Man page
curveWeights Man page
curveWeights,SlingshotDataSet-method Man page
curves Man page
curves,SlingshotDataSet-method Man page
dist_clusters_diag Source code
dist_clusters_full Source code
getCurves Man page
getCurves,SlingshotDataSet-method Man page
getLineages Man page
getLineages,SlingshotDataSet,ANY-method Man page
getLineages,data.frame,ANY-method Man page
getLineages,matrix,ANY-method Man page
getLineages,matrix,character-method Man page
getLineages,matrix,factor-method Man page
getLineages,matrix,numeric-method Man page
get_connections Source code
get_lam Source code
lineageControl Man page
lineageControl,SlingshotDataSet-method Man page
lineages Man page
lineages,SlingshotDataSet-method Man page
lines,SlingshotDataSet-method Man page
newSlingshotDataSet Man page
newSlingshotDataSet,data.frame,ANY-method Man page
newSlingshotDataSet,matrix,ANY-method Man page
newSlingshotDataSet,matrix,character-method Man page
newSlingshotDataSet,matrix,factor-method Man page
newSlingshotDataSet,matrix,numeric-method Man page
pairs-SlingshotDataSet Man page
pairs.SlingshotDataSet Man page Source code
percent_shrinkage Source code
plot3d Source code
plot3d.SlingshotDataSet Man page Source code
plotGenePseudotime Man page
plotGenePseudotime,character,SlingshotDataSet,matrix-method Man page
pseudotime Man page
pseudotime,SlingshotDataSet-method Man page
reducedDim Man page
reducedDim,SlingshotDataSet-method Man page
reducedDim<- Man page
reducedDim<-,SlingshotDataSet-method Man page
scaleAB Source code
show,SlingshotDataSet-method Man page
shrink_to_avg Source code
slingshot Man page
slingshot,SlingshotDataSet,ANY-method Man page
slingshot,data.frame,ANY-method Man page
slingshot,matrix,ANY-method Man page
slingshot,matrix,character-method Man page
slingshot,matrix,factor-method Man page
slingshot,matrix,numeric-method Man page
kstreet13/slingshot documentation built on Nov. 9, 2017, 11:58 a.m.