API for kstreet13/slingshot
Tools for ordering single-cell sequencing

Global functions
SlingshotDataSet Man page
SlingshotDataSet,SingleCellExperiment-method Man page
SlingshotDataSet-class Man page
[,SlingshotDataSet,ANY,ANY,ANY-method Man page
avg_curves Source code
cl Man page Man page
clusterLabels,SlingshotDataSet-method Man page
cumMin Source code
dist_clusters_diag Source code
dist_clusters_full Source code
getClusterLabels Source code
getCurves Man page
getCurves,SlingshotDataSet-method Man page
getLineages Man page
getLineages,SlingshotDataSet,ANY-method Man page
getLineages,data.frame,ANY-method Man page
getLineages,matrix,ANY-method Man page
getLineages,matrix,character-method Man page
getLineages,matrix,factor-method Man page
getLineages,matrix,matrix-method Man page
getLineages,matrix,numeric-method Man page
lines,SlingshotDataSet-method Man page
newSlingshotDataSet Man page
newSlingshotDataSet,data.frame,ANY-method Man page
newSlingshotDataSet,matrix,ANY-method Man page
newSlingshotDataSet,matrix,character-method Man page
newSlingshotDataSet,matrix,factor-method Man page
newSlingshotDataSet,matrix,matrix-method Man page
newSlingshotDataSet,matrix,numeric-method Man page
pairs-SlingshotDataSet Man page
pairs.SlingshotDataSet Man page Source code
params Man page
percent_shrinkage Source code
plot,SlingshotDataSet,ANY-method Man page
plot-SlingshotDataSet Man page
plot3d-SlingshotDataSet Man page
plot3d.SlingshotDataSet Man page Source code
plotGenePseudotime Man page
plotGenePseudotime,SingleCellExperiment-method Man page
plotGenePseudotime,SlingshotDataSet-method Man page
predict,SlingshotDataSet-method Man page
rd Man page
reducedDim,SlingshotDataSet-method Man page
reducedDims,SlingshotDataSet-method Man page
scaleAB Source code
show,SlingshotDataSet-method Man page
shrink_to_avg Source code
slingAdjacency Man page
slingAdjacency,SingleCellExperiment-method Man page
slingAdjacency,SlingshotDataSet-method Man page
slingCurveWeights Man page
slingCurveWeights,SingleCellExperiment-method Man page
slingCurveWeights,SlingshotDataSet-method Man page
slingCurves Man page
slingCurves,SingleCellExperiment-method Man page
slingCurves,SlingshotDataSet-method Man page
slingLineages Man page
slingLineages,SingleCellExperiment-method Man page
slingLineages,SlingshotDataSet-method Man page
slingParams Man page
slingParams,SingleCellExperiment-method Man page
slingParams,SlingshotDataSet-method Man page
slingPseudotime Man page
slingPseudotime,SingleCellExperiment-method Man page
slingPseudotime,SlingshotDataSet-method Man page
slingshot Man page
slingshot,ClusterExperiment,ANY-method Man page
slingshot,SingleCellExperiment,ANY-method Man page
slingshot,SlingshotDataSet,ANY-method Man page
slingshot,data.frame,ANY-method Man page
slingshot,matrix,ANY-method Man page
slingshot,matrix,character-method Man page
slingshot,matrix,factor-method Man page
slingshot,matrix,matrix-method Man page
slingshot,matrix,numeric-method Man page
slingshotExample Man page
splatterParameters Man page
kstreet13/slingshot documentation built on June 16, 2018, 10:45 p.m.