slingLineages: Extract the Slingshot lineages
In kstreet13/slingshot: Tools for ordering single-cell sequencing
slingLineages R Documentation
Extract the Slingshot lineages
Description
Extract lineages (represented by ordered sets of clusters)
identified by slingshot.
Usage
slingLineages(x)
## S4 method for signature 'PseudotimeOrdering'
slingLineages(x)
## S4 method for signature 'SingleCellExperiment'
slingLineages(x)
## S4 method for signature 'SlingshotDataSet'
slingLineages(x)
Arguments
x
an object containing slingshot output.
Value
A list of lineages, represented by ordered sets of clusters.
Examples
data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
pto <- slingshot(rd, cl, start.clus = '1')
slingLineages(pto)
kstreet13/slingshot documentation built on April 6, 2023, 11:12 p.m.
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| slingLineages | R Documentation |
Extract the Slingshot lineages
Description
Extract lineages (represented by ordered sets of clusters)
identified by slingshot.
Usage
slingLineages(x)
## S4 method for signature 'PseudotimeOrdering'
slingLineages(x)
## S4 method for signature 'SingleCellExperiment'
slingLineages(x)
## S4 method for signature 'SlingshotDataSet'
slingLineages(x)
Arguments
x |
an object containing |
Value
A list of lineages, represented by ordered sets of clusters.
Examples
data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
pto <- slingshot(rd, cl, start.clus = '1')
slingLineages(pto)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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