slingshotExample: Bifurcating lineages data

In kstreet13/slingshot: Tools for ordering single-cell sequencing

Bifurcating lineages data

Description

This simulated dataset contains a low-dimensional representation of two bifurcating lineages (rd) and a vector of cluster labels generated by k-means with K = 5 (cl).

Usage

data("slingshotExample")

Format

rd is a matrix of coordinates in two dimensions, representing 140 cells. cl is a numeric vector of 140 corresponding cluster labels for each cell.

Source

Simulated data provided with the slingshot package.

Examples

data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
slingshot(rd, cl)

kstreet13/slingshot documentation built on April 6, 2023, 11:12 p.m.