Man pages for kstreet13/slingshot
Tools for ordering single-cell sequencing
| as.PseudotimeOrdering | Conversion to PseudotimeOrdering |
| as.SlingshotDataSet | Conversion to SlingshotDataSet |
| embedCurves | Embed trajectory in new space |
| getCurves | Construct Simultaneous Principal Curves |
| getLineages | Infer Lineage Structure from Clustered Samples |
| newSlingshotDataSet | Initialize an object of class 'SlingshotDataSet' |
| pairs-SlingshotDataSet | Pairs plot of Slingshot output |
| plot3d-SlingshotDataSet | Plot Slingshot output in 3D |
| plot-SlingshotDataSet | Plot Slingshot output |
| predict.SlingshotDataSet | Predict from a Slingshot model |
| slingBranchGraph | Construct graph of slingshot branch labels |
| slingBranchID | Get slingshot branch labels |
| slingClusterLabels | Extract cluster labels used by Slingshot |
| slingCurves | Extract simultaneous principal curves |
| slingLineages | Extract the Slingshot lineages |
| slingMST | Extract Slingshot minimum spanning tree |
| slingParams | Methods for parameters used by Slingshot |
| slingPseudotime | Get Slingshot pseudotime values |
| slingReducedDim | Extract dimensionality reduction used by Slingshot |
| slingshot | Perform trajectory inference with Slingshot |
| SlingshotDataSet | Extract Slingshot output |
| SlingshotDataSet-class | Class 'SlingshotDataSet' |
| slingshotExample | Bifurcating lineages data |
