getDimRedData: Obtain dimensional reduction data

In kueckelj/SPATA: A Toolbox for Spatial Gene Expression Analysis

Obtain dimensional reduction data

Description

Obtain dimensional reduction data

Usage

getDimRedData(object, of_sample = "", method_dr = c("UMAP", "TSNE"))

getUmapData(object, of_sample = "")

getTsneData(object, of_sample = "")

Arguments

object	A valid spata-object.
of_sample	The sample(s) of interest specified as a single character value or vector. If set to "" (the default) the first sample is chosen.
method_dr	Character value. The dimensional reduction method of interest specified as a single character value. (Currently either 'UMAP' or 'TSNE').

Value

A data.frame that contains the unique identifiers (keys): barcodes, sample and:.

• getTsneData(): tsne1, tsne2

• getUmapData(): umap1, umap2

kueckelj/SPATA documentation built on March 22, 2022, 9:59 p.m.