getGeneSets: Obtain gene set names

In kueckelj/SPATA: A Toolbox for Spatial Gene Expression Analysis

Obtain gene set names

Description

Obtain gene set names

Usage

getGeneSets(object, of_class = "all", index = NULL, simplify = TRUE)

getGeneSetsInteractive(object)

Arguments

object	A valid spata-object.
of_class	A character vector indicating the classes from which to obtain the gene set names. (Which classes exist in the current gene set data.frame can be obtained e.g. with geneSetOverview()). If set to "all" all gene sets are returned.
index	A regular expression according to which the gene set names to be returned are filtered again.
simplify	Logical. If set to TRUE the list to be returned is simplified into a character vector.

Value

A list named according to the input of argument of_class. Each element of the returned list is a character vector containing the names of gene sets of the specified classes. The list is coalesced to an unnamed vector if simplify is set to TRUE.

kueckelj/SPATA documentation built on March 22, 2022, 9:59 p.m.