getGenes: Obtain gene names

In kueckelj/SPATA: A Toolbox for Spatial Gene Expression Analysis

Obtain gene names

Description

Obtain gene names

Usage

getGenes(object, of_gene_sets = "all", in_sample = "", simplify = TRUE)

getGenesInteractive(object)

Arguments

object	A valid spata-object.
of_gene_sets	A character vector specifying the gene sets from which to return the gene names.
in_sample	The sample(s) in which the genes have to be expressed in order to be included.
simplify	Logical. If set to TRUE the list to be returned will be simplified into a character vector.

Value

A list named according to the input of of_gene_sets in which each element is a character vector containing the names of genes the specific gene set is composed of. Is coalesced to a vector if simplify is set to TRUE.

kueckelj/SPATA documentation built on March 22, 2022, 9:59 p.m.