plotSegmentation: Plot segmentation

In kueckelj/SPATA: A Toolbox for Spatial Gene Expression Analysis

Plot segmentation

Description

Displays the segmentation of a specified sample that was drawn with SPATA::createSegmentation().

Usage

plotSegmentation(object, of_sample = "", pt_size = 2, pt_clrp = "milo")

Arguments

object	A valid spata-object.
of_sample	The sample(s) of interest specified as a single character value or vector. If set to "" (the default) the first sample is chosen.
pt_size	The size of the points specified as a single numeric value.
pt_clrp	The color panel to be used if the specified variable displayed by color is categorical/discrete. Run all_colorpanels() to see valid input.

Value

Returns a ggplot-object that can be additionally customized according to the rules of the ggplot2-framework.

kueckelj/SPATA documentation built on March 22, 2022, 9:59 p.m.