| spata-class | R Documentation |
spata object
S4 object
coordinatesA data.frame containing information about every barcode-spot. Must contain the variables:
Character. The barcode-sequences (+ the sample belonging) of every barcode spot.
Character. The sample belonging of every barcode-spot.
Numeric. The x-coordinates of every barcode.
Numeric. The y-coordinates of every barcode.
dataSee documentation for S4-object 'data'
dim_redSee documentation for S4-object 'dim_red'
fdataA data.frame containing the additionally computed features. Must contain the variables:
Character. The barcode-sequences (+ the sample belonging) of every barcode spot.
Character. The sample belonging of every barcode-spot.
imageA list of images named according to the samples the object contains.
samplesCharacter value. Contains the sample names.
scveloCurrently not in use.
trajectoriesA list named according to the samples the object contains. Each slot in that list contains another list of all 'spatial_trajectory'-objects created for that sample.
used_genesetsA data.frame containing the defined gene-sets. Must contain the variables:
Character. The gene-set name.
Character. The belonging genes.
versionA list of four slots denoting the version of SPATA under which the object has been created.
additionalA list of miscellaneous information that mainly ensures compatibility between different platforms.
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