discardGenes | R Documentation |
This function takes a vector of genes or a regular expression and discards genes from the object's data matrices, gene meta data.frames and de-analysis results that match the input.
discardGenes(
object,
genes = NULL,
regex = NULL,
include_dea = TRUE,
verbose = NULL,
of_sample = NA
)
object |
An object of class |
genes |
Character vector or NULL. If character vector, specifies the genes to be discarded by name. |
regex |
Character value or NULL. If character value, specifies the regular expression according to which genes are discarded. |
include_dea |
Logical value. If set to TRUE the results of de-analysis are included. If set to FALSE de-analysis results are skipped during the discarding steps. |
verbose |
Logical. If set to TRUE informative messages regarding the computational progress will be printed. (Warning messages will always be printed.) |
of_sample |
This argument is currently inactive. It might be reactivated when spata-objects can store more than one sample. |
An updated spata-object.
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