API for kueckelj/celltracer
An Analysis-Toolbox for High-Throughput Cell Imaging Data
| Global functions | |
|---|---|
| across_dummy | Man page Source code |
| across_picker_input | Source code |
| across_subset_picker_input | Source code |
| addClusterVariable | Man page Source code |
| addDimRedData | Man page Source code |
| addGroupingVariable | Man page Source code |
| add_family | Man page Source code |
| add_on_list | Man page Source code |
| aes_to | Man page Source code |
| allColorpanels | Man page |
| allColorspectra | Man page |
| animateAllTracks | Man page Source code |
| animateWellImage | Man page Source code |
| argument_dummy | Man page Source code |
| assemble_track_df_shiny | Man page Source code |
| bar_position_picker_input | Source code |
| cell_ids | Man page Source code |
| change_order_input | Source code |
| check_cell_track_variables | Man page Source code |
| check_object | Man page Source code |
| check_pam_input | Man page Source code |
| check_phase | Man page Source code |
| check_pt | Man page Source code |
| check_smooth | Man page Source code |
| check_track_df | Man page Source code |
| check_wp_df_shiny | Man page Source code |
| check_wp_directories | Man page Source code |
| check_wp_name | Man page Source code |
| checkpoint | Man page Source code |
| clrp_picker_input | Source code |
| cluster_df | Man page Source code |
| color_to_picker_input | Source code |
| colors | Man page Source code |
| compileCto | Man page Source code Source code |
| computeUmapData | Man page Source code |
| compute_distance | Man page Source code |
| compute_distances_from_origin | Man page Source code |
| compute_migration_efficiency | Man page Source code |
| compute_stat | Man page Source code |
| debugging | Source code |
| dim_red_df | Man page Source code |
| dim_red_method | Man page Source code |
| doPamClustering | Man page Source code |
| evaluate_file_availability | Man page Source code |
| filterTracks | Man page Source code |
| getAcrossOptions | Man page |
| getCellLines | Man page |
| getClusterData | Man page Source code |
| getClusterNames | Man page Source code |
| getConditions | Man page |
| getData | Man page Source code |
| getDimRed | Man page Source code |
| getGroupNames | Man page |
| getGroupingOptions | Man page |
| getGroups | Man page |
| getMeta | Man page Source code |
| getPamObject | Man page Source code |
| getStatVariableNames | Man page |
| getStats | Man page Source code |
| getStatsDf | Man page Source code |
| getTracks | Man page Source code |
| getVariableValues | Man page |
| getWellPlateNames | Man page |
| ggplot_family | Man page Source code |
| ggplot_return | Man page Source code |
| ggpubr_comparison_list | Man page Source code |
| ggpubr_y_labels | Man page Source code |
| hlpr_assemble_directory | Man page Source code |
| hlpr_assemble_track_df | Man page Source code |
| hlpr_caption_add_on | Man page Source code |
| hlpr_coords_flip_add_on | Man page Source code |
| hlpr_create_track_list | Man page Source code |
| hlpr_order_input | Man page Source code |
| hlpr_plot_well_plate_fill | Man page Source code |
| hlpr_pretty_colnames | Man page Source code |
| hlpr_pretty_value | Man page Source code |
| hlpr_pretty_vec | Man page Source code |
| hlpr_rename_cell_track_cols | Man page Source code |
| hlpr_select_stats | Man page Source code |
| hlpr_subset_across | Man page Source code |
| hlpr_wp_ambiguous_number | Man page |
| hlpr_wp_ambiguous_number_f | Man page Source code |
| hlpr_wp_directories | Man page Source code |
| hlpr_wp_exp_file_number | Man page Source code |
| hlpr_wp_file_number | Man page |
| hlpr_wp_file_number_f | Man page Source code |
| hs | Man page Source code |
| image | Man page Source code |
| initiateCTO | Man page Source code |
| input_df | Man page Source code |
| join_with_meta | Source code |
| launchCellTracer | Man page Source code |
| linesize | Man page Source code |
| linetype | Man page Source code |
| load_cell_track_files_shiny | Man page Source code |
| loading_status_table_shiny | Man page Source code |
| moduleAllTracksServer | Source code |
| moduleAllTracksUI | Source code |
| moduleCategStatPlotServer | Source code |
| moduleCategStatPlotUI | Source code |
| moduleClusteringPamServer | Source code |
| moduleClusteringPamUI | Source code |
| moduleDescrStatPlotServer | Source code |
| moduleDescrStatPlotUI | Source code |
| moduleExperimentDesignServer | Man page Source code |
| moduleExperimentDesignUI | Man page Source code |
| moduleLoadDataServer | Man page Source code |
| moduleLoadDataUI | Man page Source code |
| moduleQualityCheckServer | Man page Source code |
| moduleQualityCheckUI | Man page Source code |
| moduleSaveAsPdfServer | Source code |
| moduleSaveAsPdfUI | Source code |
| moduleVelocityHeatmapServer | Source code |
| moduleVelocityHeatmapUI | Source code |
| moduleVelocityLineplotServer | Source code |
| moduleVelocityLineplotUI | Source code |
| n_cells | Man page Source code |
| n_cells_numeric_input | Source code |
| numeric_variables_picker_input | Source code |
| phase_all | Man page Source code |
| phase_cluster | Man page Source code |
| phase_cluster_picker_input | Source code |
| phase_picker_input | Source code |
| phase_single | Man page Source code |
| plotAllTracks | Man page Source code |
| plotBarchart | Man page Source code |
| plotBoxplot | Man page Source code |
| plotCellCount | Man page Source code |
| plotDensityplot | Man page Source code |
| plotDimRed | Man page Source code |
| plotDistribution | Man page Source code |
| plotDistributionDiscrete | Man page Source code |
| plotHistogram | Man page Source code |
| plotPamClusterCount | Man page Source code |
| plotPamClusterSummary | Man page Source code |
| plotPamMedoidSummary | Man page Source code |
| plotPamSilWidth | Man page Source code |
| plotRidgeplot | Man page Source code |
| plotSingleTracks | Man page Source code |
| plotVelocityHeatmap | Man page Source code |
| plotVelocityLineplot | Man page Source code |
| plotViolinplot | Man page Source code |
| plotWellPlate | Man page Source code |
| plot_and_save | Source code |
| plot_qc_barplot_shiny | Man page Source code |
| plot_qc_histogram_shiny | Man page Source code |
| plot_well_plate_shiny | Man page Source code |
| pretty_names | Man page Source code |
| pt_args | Man page Source code |
| quality_check_summary_shiny | Man page Source code |
| read_ct_data_shiny | Man page Source code |
| setUpWellPlateDf | Man page Source code |
| shiny_fdb | Man page Source code |
| time_displaced_tmt | Source code |
| updated_object | Man page Source code |
| validate_timedisplaced_tmt | Source code |
| variables_num | Man page Source code |
| verbose | Man page Source code |
| well | Man page Source code |
| well_panel | Source code |
| well_plate | Man page Source code |
| with_cluster | Man page Source code |
| with_meta | Man page Source code |
| with_stats | Man page Source code |
