Files in kueckelj/celltracer

An Analysis-Toolbox for High-Throughput Cell Imaging Data

R/S4-documentation.R R/add-family.R R/animate-family.R R/check-family.R R/checkpoint.R R/clustering.R R/compile-cto.R R/compute-family.R R/data-loading.R R/debugging-aid.R R/documentation-dummies.R R/get-family.R R/helper-family.R R/imported-functions.R R/initiate-cto.R R/launch-celltracer.R R/miscellaneous.R R/module-all-tracks.R R/module-categorical-statistics.R R/module-clustering-pam.R R/module-descriptive-statistics.R R/module-experiment-design-server.R R/module-experiment-design-ui.R R/module-load-data-server.R R/module-load-data-ui.R R/module-quality-check-server.R R/module-quality-check-ui.R R/module-save-as-pdf.R R/module-velocity-heatmap.R R/module-velocity-lineplot.R R/plot-family-statistics.R R/plot-family.R R/predefined-shiny-widgets.R R/r-objects.R R/setUp-family.R R/shiny-functions.R R/statistic-functions.R README.md index.md man/across_dummy.Rd man/addClusterVariable.Rd man/addDimRedData.Rd man/add_family.Rd man/add_on_list.Rd man/aes_to.Rd man/allColorpanels.Rd man/animateAllTracks.Rd man/animateWellImage.Rd man/argument_dummy.Rd man/assemble_track_df_shiny.Rd man/cell_ids.Rd man/check_cell_track_variables.Rd man/check_object.Rd man/check_pam_input.Rd man/check_phase.Rd man/check_pt.Rd man/check_smooth.Rd man/check_track_df.Rd man/check_wp_df_shiny.Rd man/check_wp_directories.Rd man/check_wp_name.Rd man/checkpoint.Rd man/cluster_df.Rd man/colors.Rd man/compileCto.Rd man/computeUmapData.Rd man/compute_distance.Rd man/compute_distances_from_origin.Rd man/compute_migration_efficiency.Rd man/compute_stat.Rd man/dim_red_df.Rd man/dim_red_method.Rd man/doPamClustering.Rd man/evaluate_file_availability.Rd man/filterTracks.Rd man/getCellLines.Rd man/getClusterData.Rd man/getClusterNames.Rd man/getData.Rd man/getDimRed.Rd man/getGroupNames.Rd man/getGroupingOptions.Rd man/getMeta.Rd man/getPamObject.Rd man/getStatVariableNames.Rd man/getStats.Rd man/getTracks.Rd man/getVariableValues.Rd man/getWellPlateNames.Rd man/ggplot_family.Rd man/ggplot_return.Rd man/ggpubr_comparison_list.Rd man/hlpr_assemble_directory.Rd man/hlpr_assemble_track_df.Rd man/hlpr_caption_add_on.Rd man/hlpr_coords_flip_add_on.Rd man/hlpr_create_track_list.Rd man/hlpr_order_input.Rd man/hlpr_pretty_colnames.Rd man/hlpr_rename_cell_track_cols.Rd man/hlpr_select_stats.Rd man/hlpr_subset_across.Rd man/hlpr_wp_directories.Rd man/hs.Rd man/image.Rd man/initiateCTO.Rd man/input_df.Rd man/launchCellTracer.Rd man/linesize.Rd man/linetype.Rd man/load_cell_track_files_shiny.Rd man/loading_status_table_shiny.Rd man/moduleExperimentDesignServer.Rd man/moduleExperimentDesignUI.Rd man/moduleLoadDataServer.Rd man/moduleLoadDataUI.Rd man/moduleQualityCheckServer.Rd man/moduleQualityCheckUI.Rd man/n_cells.Rd man/phase_all.Rd man/phase_cluster.Rd man/phase_single.Rd man/plotAllTracks.Rd man/plotBarchart.Rd man/plotBoxplot.Rd man/plotCellCount.Rd man/plotDimRed.Rd man/plotDistribution.Rd man/plotDistributionDiscrete.Rd man/plotPamClusterCount.Rd man/plotPamClusterSummary.Rd man/plotPamMedoidSummary.Rd man/plotPamSilWidth.Rd man/plotSingleTracks.Rd man/plotVelocityHeatmap.Rd man/plotVelocityLineplot.Rd man/plotWellPlate.Rd man/plot_qc_barplot_shiny.Rd man/plot_qc_histogram_shiny.Rd man/plot_well_plate_shiny.Rd man/pretty_names.Rd man/pt_args.Rd man/quality_check_summary_shiny.Rd man/read_ct_data_shiny.Rd man/setUpWellPlateDf.Rd man/shiny_fdb.Rd man/updated_object.Rd man/variables_num.Rd man/verbose.Rd man/well.Rd man/well_plate.Rd man/with_cluster.Rd man/with_meta.Rd man/with_stats.Rd