Man pages for kun-ecology/ecoloop
Loop for ecological data analysis
| bdiv.f | A function to derive LCBD and SCBD from function beta.div |
| cal_mean.sd | Calculated mean±sd |
| cal_taxo.div | Calculate taxonomic diversity |
| construct_fourmula | Construct formula with multipe response and explanatory... |
| dist2df | Convert dist and matrix type data into dataframe |
| envls_trans | Transformation for a list with environmental variables in... |
| fst.comdistnt | fast computation of inter-community mean nearest taxon... |
| fst.ses.mntd | fast computation of MNTD/SES.MNTD |
| fst.ses.mpd | Fast computation of MPD and SES.MPD |
| fst.ses.pd | fst.ses.pd a function for calculating PD |
| get_aov.letter | Get multiple comparison letters from anova (HSD.test,package... |
| get_corr_df | A function return correlation and p value in dataframe... |
| get_files_dir | A function that return list of file naes with specified... |
| get_ind_val | Conduct indicator species analsyis |
| get_lm_summary | Get tidy results from linear, nls, lmer, lme, sarlm mode |
| get_vpa_df | Get tidy data from results generated by my_vpa or spbased_vpa |
| group_taxa | Group taxa into dominant and rare sub-communities |
| immediateMessage | Diagnostic messages when using furrr for parellization |
| lme_var.part | variation partitioning for linear mixed model |
| md2nat | A function to calculate MPD or MNTD between native and aliens... |
| my_log1p | Customed log1p for data with negative value less than -1 |
| my_mantel | Customed mantel |
| my_ordination | Customized function for PCoA and NMDS |
| my_vpa | Conduct VPA after CCA or RDA |
| rand_var.part | extract explained variation for each nested level in lmer... |
| saveall | Save a list with non-dataframe data into csv/txt file |
| spbased_vpa | Conduct species based VPA |
| specify_decimal | Specify decimal number for numeric data |
| spM_trans | Species matrix transformation |
