fst.comdistnt: fast computation of inter-community mean nearest taxon...

In kun-ecology/ecoloop: Loop for ecological data analysis

fast computation of inter-community mean nearest taxon distance (bNTI)

Description

fast computation of inter-community mean nearest taxon distance (bNTI)

Usage

fst.comdistnt(
  comm,
  phy_dist,
  exclude_conspecifics = FALSE,
  nworkers = NULL,
  ses = F,
  abundance_weighted = FALSE,
  runs = NULL
)

Arguments

comm	a data.frame containing species abundance
phy_dist	a matrix containing phylogenetic distance
exclude_conspecifics	Should conspecific taxa in different communities be exclude from MNTD calculations? (default = FALSE)
nworkers	numbers of cores used for computation
ses	if ses.bNTI or NTI be calculated
abundance_weighted	whether bNTI is abundance weighted
runs	999 random draws, can be set to to smaller number to reduce computation time

kun-ecology/ecoloop documentation built on Jan. 9, 2025, 10:20 a.m.