fst.ses.mpd: Fast computation of MPD and SES.MPD

In kun-ecology/ecoloop: Loop for ecological data analysis

Fast computation of MPD and SES.MPD

Description

Fast computation of MPD and SES.MPD

Usage

fst.ses.mpd(
  comm,
  phy_dist,
  null_model = "taxaShuffle",
  nworkers = NULL,
  ses = F,
  abundance_weighted = F,
  runs = NULL
)

Arguments

comm	a data.frame containing species abundance, better set site name as rowname
phy_dist	a matrix containing phylogenetic distance
null_model	only implemented for random taxa.labels
nworkers	numbers of cores used for computation
ses	if SES.MPD should be calculated
abundance_weighted	whether MPD/SES.MPD is abundance weighted
runs	usually 999 random draws, can be set to to smaller number to reduce computation time

kun-ecology/ecoloop documentation built on Jan. 9, 2025, 10:20 a.m.