md2nat: A function to calculate MPD or MNTD between native and aliens...

In kun-ecology/ecoloop: Loop for ecological data analysis

A function to calculate MPD or MNTD between native and aliens species

Description

A function to calculate MPD or MNTD between native and aliens species

Usage

md2nat(
  comm,
  phy_dist,
  native_sp.ls,
  invasive_sp.ls,
  ses = F,
  method = "mpd",
  abundance_weighted = F,
  nworkers = NULL,
  runs = NULL
)

Arguments

comm	a data.frame containing species abundance
phy_dist	a matrix containing phylogenetic distance
native_sp.ls	a vector containing native species
invasive_sp.ls	a vector containing native species
ses	if ses.bNTI or bNTI be calculated
method	MPD (default) or MNTD
abundance_weighted	should be indcies be abundance-weighted (default FALSE)
nworkers	numbers of cores used for computation
runs	999 random draws, can be set to to smaller number to reduce computation time

kun-ecology/ecoloop documentation built on Jan. 9, 2025, 10:20 a.m.