Files in labbcb/GA4GHclient

A Bioconductor package for accessing GA4GH API data servers

R/AllUtilities.R R/GA4GHclient-package.R R/HGVSnames.R R/getBiosample.R R/getCallSet.R R/getDataset.R R/getExpressionLevel.R R/getFeature.R R/getFeatureSet.R R/getIndividual.R R/getReadGroupSet.R R/getReference.R R/getReferenceSet.R R/getRnaQuantification.R R/getRnaQuantificationSet.R R/getVariant.R R/getVariantAnnotationSet.R R/getVariantSet.R R/listReferenceBases.R R/makeVCFFromGA4GHResponse.R R/makeVCFHeaderFromGA4GHResponse.R R/searchBiosamples.R R/searchCallSets.R R/searchDatasets.R R/searchExpressionLevels.R R/searchFeatureSets.R R/searchFeatures.R R/searchIndividuals.R R/searchPhenotypeAssociationSets.R R/searchPhenotypeAssociations.R R/searchReadGroupSets.R R/searchReads.R R/searchReferenceSets.R R/searchReferences.R R/searchRnaQuantificationSets.R R/searchRnaQuantifications.R R/searchVariantAnnotationSets.R R/searchVariantAnnotations.R R/searchVariantSets.R R/searchVariants.R R/searchVariantsByGRanges.R README.md man/GA4GHclient-package.Rd man/HGVSnames.Rd man/getBiosample.Rd man/getCallSet.Rd man/getDataset.Rd man/getExpressionLevel.Rd man/getFeature.Rd man/getFeatureSet.Rd man/getIndividual.Rd man/getReadGroupSet.Rd man/getReference.Rd man/getReferenceSet.Rd man/getRnaQuantification.Rd man/getRnaQuantificationSet.Rd man/getVariant.Rd man/getVariantAnnotationSet.Rd man/getVariantSet.Rd man/listReferenceBases.Rd man/makeVCFFromGA4GHResponse.Rd man/makeVCFHeaderFromGA4GHResponse.Rd man/searchBiosamples.Rd man/searchCallSets.Rd man/searchDatasets.Rd man/searchExpressionLevels.Rd man/searchFeatureSets.Rd man/searchFeatures.Rd man/searchIndividuals.Rd man/searchPhenotypeAssociationSets.Rd man/searchPhenotypeAssociations.Rd man/searchReadGroupSets.Rd man/searchReads.Rd man/searchReferenceSets.Rd man/searchReferences.Rd man/searchRnaQuantificationSets.Rd man/searchRnaQuantifications.Rd man/searchVariantAnnotationSets.Rd man/searchVariantAnnotations.Rd man/searchVariantSets.Rd man/searchVariants.Rd man/searchVariantsByGRanges.Rd tests/testthat.R tests/testthat/test-HGVSnames.R tests/testthat/test-getBiosample.R tests/testthat/test-getCallSet.R tests/testthat/test-getDataset.R tests/testthat/test-getExpressionLevel.R tests/testthat/test-getFeature.R tests/testthat/test-getFeatureSet.R tests/testthat/test-getIndividual.R tests/testthat/test-getReadGroupSet.R tests/testthat/test-getReference.R tests/testthat/test-getReferenceSets.R tests/testthat/test-getRnaQuantification.R tests/testthat/test-getRnaQuantificationSet.R tests/testthat/test-getVariant.R tests/testthat/test-getVariantAnnotationSet.R tests/testthat/test-getVariantSet.R tests/testthat/test-listReferenceBases.R tests/testthat/test-makeVCFFromGA4GHResponse.R tests/testthat/test-makeVCFHeaderFromGA4GHResponse.R tests/testthat/test-request.get.R tests/testthat/test-request.post.R tests/testthat/test-searchBiosamples.R tests/testthat/test-searchCallSets.R tests/testthat/test-searchDatasets.R tests/testthat/test-searchExpressionLevels.R tests/testthat/test-searchFeatureSets.R tests/testthat/test-searchFeatures.R tests/testthat/test-searchIndividuals.R tests/testthat/test-searchPhenotypeAssociationSets.R tests/testthat/test-searchPhenotypeAssociations.R tests/testthat/test-searchReadGroupSets.R tests/testthat/test-searchReads.R tests/testthat/test-searchReferenceSets.R tests/testthat/test-searchReferences.R tests/testthat/test-searchRnaQuantificationSets.R tests/testthat/test-searchRnaQuantifications.R tests/testthat/test-searchVariantAnnotationSets.R tests/testthat/test-searchVariantAnnotations.R tests/testthat/test-searchVariantSets.R tests/testthat/test-searchVariants.R tests/testthat/test-searchVariantsByGRanges.R vignettes/GA4GHclient.Rmd