searchReferences: searchReferences function
In labbcb/GA4GHclient: A Bioconductor package for accessing GA4GH API data servers

Description Usage Arguments Details Value References See Also Examples

Search for references (genome sequences, e.g. chromosomes).

1 2	searchReferences(host, referenceSetId, md5checksum = NA_character_, accession = NA_character_, nrows = Inf, responseSize = NA_integer_)

`host`	URL of GA4GH API data server.
`referenceSetId`	The ReferenceSet to search.
`md5checksum`	If specified, return the references for which the md5checksum matches this string (case-sensitive, exact match). See ReferenceSet::md5checksum for details.
`accession`	If specified, return the references for which the accession matches this string (case-sensitive, exact match).
`nrows`	Number of rows of the data frame returned by this function. If not defined, the function will return all entries. If the number of available entries is less than the value of this this parameter, the function will silently return only the available entries.
`responseSize`	Specifies the number of entries to be returned by the server until reach the number of rows defined in `nrows` parameter or until get all available entries. If not defined, the server will return the allowed maximum reponse size. Increasing this the value of this parameter will reduce the number of requests and reducing the time required. The will not respect this parameter if the value if larger than its maximum response size.

This function requests POST host/references/search.

DataFrame object.

Official documentation.

DataFrame, getReference

host <- "http://1kgenomes.ga4gh.org/"
## Not run: 
referenceSetId <- searchReferenceSets(host, nrows = 1)$id
searchReferences(host, referenceSetId)

## End(Not run)