getCallSet: getCallSet function
In labbcb/GA4GHclient: A Bioconductor package for accessing GA4GH API data servers
Description
Usage
Arguments
Details
Value
References
See Also
Examples
Description
Get a call set by its ID.
Usage
1
getCallSet(host, callSetId)
Arguments
host
URL of GA4GH API data server.
callSetId
The ID of the CallSet to be retrieved.
Details
This request maps to GET host/callsets/callSetId.
Value
DataFrame object.
References
See Also
Examples
1
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3
4
5
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7
8
host <- "http://1kgenomes.ga4gh.org/"
## Not run:
datasetId <- searchDatasets(host, nrows = 1)$id
variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id
callSetId <- searchCallSets(host, variantSetId, nrows = 1)$id
getCallSet(host, callSetId)
## End(Not run)
labbcb/GA4GHclient documentation built on May 20, 2019, 7:32 p.m.
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Description Usage Arguments Details Value References See Also Examples
Description
Get a call set by its ID.
Usage
1 | getCallSet(host, callSetId)
|
Arguments
host |
URL of GA4GH API data server. |
callSetId |
The ID of the CallSet to be retrieved. |
Details
This request maps to GET host/callsets/callSetId.
Value
DataFrame object.
References
See Also
Examples
1 2 3 4 5 6 7 8 | host <- "http://1kgenomes.ga4gh.org/"
## Not run:
datasetId <- searchDatasets(host, nrows = 1)$id
variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id
callSetId <- searchCallSets(host, variantSetId, nrows = 1)$id
getCallSet(host, callSetId)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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