labbcb/GA4GHclient
A Bioconductor package for accessing GA4GH API data servers

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labbcb/GA4GHclient: A Bioconductor package for accessing GA4GH API data servers
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Man pages for labbcb/GA4GHclient
A Bioconductor package for accessing GA4GH API data servers

GA4GHclient-packageA Bioconductor package for accessing GA4GH API data server
getBiosamplegetBiosample function
getCallSetgetCallSet function
getDatasetgetDataset function
getExpressionLevelgetExpressionLevel function
getFeaturegetFeature function
getFeatureSetgetFeatureSet function
getIndividualgetIndividual function
getReadGroupSetgetReadGroupSet function
getReferencegetReference function
getReferenceSetgetReferenceSet function
getRnaQuantificationgetRnaQuantification function
getRnaQuantificationSetgetRnaQuantificationSet function
getVariantgetVariant function
getVariantAnnotationSetGets getVariantAnnotationSet function
getVariantSetgetVariantSet function.
HGVSnamesGenerate genomic variant data to HGVS nomenclature
listReferenceBaseslistReferenceBases function
makeVCFFromGA4GHResponsemakeVCFFromGA4GHResponse function
makeVCFHeaderFromGA4GHResponsemakeVCFHeaderFromGA4GHResponse function
searchBiosamplessearchBiosamples function
searchCallSetssearchCallSets function
searchDatasetssearchDatasets function
searchExpressionLevelssearchExpressionLevels function
searchFeaturessearchFeatures function
searchFeatureSetssearchFeatureSets function
searchIndividualssearchIndividuals function
searchPhenotypeAssociationssearchPhenotypeAssociations function
searchPhenotypeAssociationSetssearchPhenotypeAssociationSets function
searchReadGroupSetssearchReadGroupSets function
searchReadssearchReads function
searchReferencessearchReferences function
searchReferenceSetssearchReferenceSets function
searchRnaQuantificationssearchRnaQuantifications function
searchRnaQuantificationSetssearchRnaQuantificationSets function
searchVariantAnnotationssearchVariantAnnotations function
searchVariantAnnotationSetssearchVariantAnnotationSets function
searchVariantssearchVariants function
searchVariantsByGRangessearchVariantsByGranges function
searchVariantSetssearchVariantSets function
labbcb/GA4GHclient documentation built on May 20, 2019, 7:32 p.m.

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