Files in lambdamoses/BUStoolsR
kallisto | bustools R utilities

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/annots_from_fa.R R/biotypes.R R/get_tx.R R/knee_plot.R R/sparse_matrix.R R/tr2g.R R/utils.R R/velocity.R R/velocity_methods.R README.md data-raw/generate_matrix_test.R data-raw/generate_tr2g_test.R data-raw/generate_velocity_test.R
data/cellranger_biotypes.rda
data/ensembl_gene_biotypes.rda
data/ensembl_gff_mcols.rda
data/ensembl_gtf_mcols.rda
data/ensembl_tx_biotypes.rda
data/refseq_gff_mcols.rda
inst/testdata/fa_tr2g_dm.csv
inst/testdata/fa_tr2g_expected.csv
inst/testdata/fa_tr2g_no_version.csv
inst/testdata/fasta_dm_test.fasta
inst/testdata/fasta_test.fasta
inst/testdata/genes.barcodes.txt
inst/testdata/genes.genes.txt
inst/testdata/genes.mtx
inst/testdata/gff3_test.gff3
inst/testdata/gtf_test.gtf
inst/testdata/junction_capture.txt
inst/testdata/junction_coll.fa
inst/testdata/junction_tr2g.tsv
inst/testdata/junction_tr2g_coll.tsv
inst/testdata/junctions.fa
inst/testdata/matrix.ec
inst/testdata/output.sorted.txt
inst/testdata/toy_example.RData
inst/testdata/tr2g_bustools.tsv
inst/testdata/tr2g_expected.csv
inst/testdata/tr2g_expected_version.csv
inst/testdata/transcripts.txt
inst/testdata/velocity_annot.gtf
inst/testdata/velocity_cdna_tx.txt
inst/testdata/velocity_genome.fa
inst/testdata/velocity_introns.fa
inst/testdata/velocity_introns_capture.txt
inst/testdata/velocity_introns_coll.fa
inst/testdata/velocity_introns_coll_capture.txt
inst/testdata/velocity_tr2g.tsv
inst/testdata/velocity_tr2g_coll.tsv
inst/testdata/velocity_tx.fa
man/EC2gene.Rd man/annot_circular.Rd man/annots_from_fa_df.Rd man/cellranger_biotypes.Rd man/check_char1.Rd man/check_genome.Rd man/check_gff.Rd man/check_tag_present.Rd man/check_tx.Rd man/dl_transcriptome.Rd man/dot-get_velocity_files.Rd man/ensembl_gene_biotypes.Rd man/ensembl_gff_mcols.Rd man/ensembl_gtf_mcols.Rd man/ensembl_tx_biotypes.Rd man/get_intron_flanks.Rd man/get_velocity_files.Rd man/knee_plot.Rd man/make_sparse_matrix.Rd man/match_style.Rd man/read_count_output.Rd man/read_velocity_output.Rd man/refseq_gff_mcols.Rd man/save_tr2g_bustools.Rd man/sort_tr2g.Rd man/species2dataset.Rd man/standardize_tags.Rd man/sub_annot.Rd man/subset_annot.Rd man/tr2g_EnsDb.Rd man/tr2g_GRanges.Rd man/tr2g_TxDb.Rd man/tr2g_ensembl.Rd man/tr2g_fasta.Rd man/tr2g_gff3.Rd man/tr2g_gtf.Rd man/tr2g_junction.Rd man/transcript2gene.Rd man/validate_velocity_input.Rd man/write_velocity_output.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/fill_cell_gene.cpp
tests/testthat.R tests/testthat/test_sparse_matrix.R tests/testthat/test_tr2g.R tests/testthat/test_velocity.R
vignettes/.gitignore
vignettes/sparse-matrix.Rmd vignettes/tr2g.Rmd
lambdamoses/BUStoolsR documentation built on June 9, 2021, 6:15 p.m.