get_intron_flanks: Get flanked intronic ranges

View source: R/velocity.R

get_intron_flanksR Documentation

Get flanked intronic ranges

Description

Get flanked intronic ranges

Usage

get_intron_flanks(grl, L, get_junctions)

Arguments

grl

A CompressedGRangesList for exonic ranges, each element for one transcript.

L

Read length.

get_junctions

Logical, whether to also return exon-exon junctions.

Value

If get_junctions is FALSE, then a GRanges object with ranges for flanked intronic regions. If get_junctions is TRUE, then in addition to the flanked intronic ranges, a CompressedGRangesList with exon-exon junction ranges and ranges for transcripts without introns.


lambdamoses/BUStoolsR documentation built on Aug. 28, 2022, 1:35 p.m.