check_genome: Check for chromosomes in genome but not annotation
In lambdamoses/BUStoolsR: kallisto | bustools R utilities
check_genome R Documentation
Check for chromosomes in genome but not annotation
Description
Check for chromosomes in genome but not annotation
Usage
check_genome(chrs_use, Genome)
Arguments
chrs_use
Character vector of names of chromosomes present in both the
annotation and the genome.
Genome
Either a BSgenome or a XStringSet
object of genomic sequences, where the intronic sequences will be extracted
from. Use genomeStyles to check which styles are supported for
your organism of interest; supported styles can be interconverted. If the
style in your genome or annotation is not supported, then the style of
chromosome names in the genome and annotation should be manually set to be
consistent.
Value
Nothing. Will emit message if the genome contains chromosomes absent
from the annotation.
lambdamoses/BUStoolsR documentation built on Aug. 1, 2024, 6:30 a.m.
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| check_genome | R Documentation |
Check for chromosomes in genome but not annotation
Description
Check for chromosomes in genome but not annotation
Usage
check_genome(chrs_use, Genome)
Arguments
chrs_use |
Character vector of names of chromosomes present in both the annotation and the genome. |
Genome |
Either a |
Value
Nothing. Will emit message if the genome contains chromosomes absent from the annotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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