check_genome: Check for chromosomes in genome but not annotation

Description Usage Arguments Value

View source: R/velocity.R

Description

Check for chromosomes in genome but not annotation

Usage

1
check_genome(chrs_use, Genome)

Arguments

chrs_use

Character vector of names of chromosomes present in both the annotation and the genome.

Genome

Either a BSgenome or a XStringSet object of genomic sequences, where the intronic sequences will be extracted from. Use genomeStyles to check which styles are supported for your organism of interest; supported styles can be interconverted. If the style in your genome or annotation is not supported, then the style of chromosome names in the genome and annotation should be manually set to be consistent.

Value

Nothing. Will emit message if the genome contains chromosomes absent from the annotation.


lambdamoses/BUStoolsR documentation built on June 9, 2021, 6:15 p.m.