annot_circular: Transfer information about circular chromosomes between...
In lambdamoses/BUStoolsR: kallisto | bustools R utilities
annot_circular R Documentation
Transfer information about circular chromosomes between genome and annotation
Description
Internal use, called after calling subset_annot.
Usage
annot_circular(Genome, annot)
Arguments
Genome
Either a BSgenome or a XStringSet
object of genomic sequences, where the intronic sequences will be extracted
from. Use genomeStyles to check which styles are supported for
your organism of interest; supported styles can be interconverted. If the
style in your genome or annotation is not supported, then the style of
chromosome names in the genome and annotation should be manually set to be
consistent.
annot
Genome annotation, an object of a class with a
seqlevels method, such as GRanges, TxDb, and EnsDb.
Value
If neither genome nor annotation indicates which chromosome is
circular, then the input will be returned unchanged. If only one of genome
and annotation has such information, then it will be transferred to the one
that does not. If both do have such information, the information from the
genome will be transferred to the annotation if they're different.
lambdamoses/BUStoolsR documentation built on Aug. 1, 2024, 6:30 a.m.
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| annot_circular | R Documentation |
Transfer information about circular chromosomes between genome and annotation
Description
Internal use, called after calling subset_annot.
Usage
annot_circular(Genome, annot)
Arguments
Genome |
Either a |
annot |
Genome annotation, an object of a class with a
|
Value
If neither genome nor annotation indicates which chromosome is circular, then the input will be returned unchanged. If only one of genome and annotation has such information, then it will be transferred to the one that does not. If both do have such information, the information from the genome will be transferred to the annotation if they're different.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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