ReadAlevin: Load in data from Alevin pipeline
In lambdamoses/SeuratBasics: Slimmed down version of Seurat
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/preprocessing.R
Description
Enables easy loading of binary format matrix provided by Alevin
Usage
1
ReadAlevin(base.path)
Arguments
base.path
Directory containing the alevin/quant_mat*
files provided by Alevin.
Value
Returns a matrix with rows and columns labeled
Author(s)
Avi Srivastava
Examples
1
2
3
4
5
6
7
## Not run:
data_dir <- 'path/to/output/directory'
list.files(data_dir) # Should show alevin/quants_mat* files
expression_matrix <- ReadAlevin(base.path = data_dir)
seurat_object = CreateSeuratObject(counts = expression_matrix)
## End(Not run)
lambdamoses/SeuratBasics documentation built on May 6, 2020, 9:32 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
View source: R/preprocessing.R
Description
Enables easy loading of binary format matrix provided by Alevin
Usage
1 | ReadAlevin(base.path)
|
Arguments
base.path |
Directory containing the alevin/quant_mat* files provided by Alevin. |
Value
Returns a matrix with rows and columns labeled
Author(s)
Avi Srivastava
Examples
1 2 3 4 5 6 7 | ## Not run:
data_dir <- 'path/to/output/directory'
list.files(data_dir) # Should show alevin/quants_mat* files
expression_matrix <- ReadAlevin(base.path = data_dir)
seurat_object = CreateSeuratObject(counts = expression_matrix)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.