Files in lauzikaite/massFlowR
LC-MS Data Pre-Processing
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/classes.R
R/constructors.R
R/functions-alignPEAKS_helpers.R
R/functions-annotateDS_helpers.R
R/functions-buildDB.R
R/functions-fillPEAKS_helpers.R
R/functions-groupPEAKS.R
R/functions-groupPEAKS_helpers.R
R/functions-validPEAKS_helpers.R
R/functions-validmassFlowAnno.R
R/functions-validmassFlowTemplate.R
R/generics.R
R/massFlowR.R
R/methods-massFlowAnno.R
R/methods-massFlowTemplate.R
R/utils.R
R/zzz.R
README.Rmd
README.md
doc/annotation.R
doc/annotation.Rmd
doc/massFlowR.R
doc/massFlowR.Rmd
inst/testdata/DSannotated.csv
inst/testdata/database.csv
inst/testdata/devset_filled_intensity_data.csv
inst/testdata/filled_intensity_data.csv
inst/testdata/metadata.csv
man/addERRS.Rd
man/alignPEAKS-massFlowTemplate-method.Rd
man/annotateDS-massFlowAnno-method.Rd
man/assignCOS.Rd
man/buildANNO.Rd
man/buildDB.Rd
man/buildGRAPH.Rd
man/buildTMP.Rd
man/buildVECTOR.Rd
man/checkANNOTATION-massFlowAnno-method.Rd
man/checkFILE.Rd
man/cleanPEAKS.Rd
man/comparePCS-massFlowAnno-method.Rd
man/corEIC.Rd
man/corPEAKS.Rd
man/do_alignPEAKS.Rd
man/do_groupPEAKS.Rd
man/exportPEAK.Rd
man/exportSAMPLE.Rd
man/extractCOMMUNITIES.Rd
man/extractEIC.Rd
man/extractINT.Rd
man/extractMISS.Rd
man/extractPEAKGR.Rd
man/figures/scheme.png
man/filepath-massFlowTemplate-method.Rd
man/fillPEAKS-massFlowTemplate-method.Rd
man/fillSAMPLE.Rd
man/findANNOchemid-massFlowAnno-method.Rd
man/findANNOpcs-massFlowAnno-method.Rd
man/getCORmat.Rd
man/getCOSmat.Rd
man/getINT.Rd
man/getMATCHES.Rd
man/getPEAKIDS.Rd
man/getPEAKmedians.Rd
man/getRTbins.Rd
man/groupPEAKS.Rd
man/groupPEAKS_paral.Rd
man/loadALIGNED.Rd
man/massFlowAnno-class.Rd
man/massFlowR-package.Rd
man/massFlowTemplate-class.Rd
man/modelPEAKS.Rd
man/normSPEC.Rd
man/orderBYrt.Rd
man/peaksVALIDATED-massFlowTemplate-method.Rd
man/pickPEAKS.Rd
man/rankCOS.Rd
man/rbindCLEAN.Rd
man/readDATA.Rd
man/scaleEDGES.Rd
man/smoothVALUE.Rd
man/validFILE.Rd
man/validPEAKGR.Rd
man/validPEAKS-massFlowTemplate-method.Rd
tests/testthat.R
tests/testthat/setup.R
tests/testthat/teardown.R
tests/testthat/test-alignPEAKS_helpers.R
tests/testthat/test-classes.R
tests/testthat/test-fillPEAKS_helpers.R
tests/testthat/test-groupPEAKS.R
tests/testthat/test-groupPEAKS_helpers.R
tests/testthat/test-methods.R
tests/testthat/test-utils.R
tests/testthat/test-validPEAKS_helpers.R
vignettes/annotation.R
vignettes/annotation.Rmd
vignettes/annotation.html
vignettes/massFlowR.R
vignettes/massFlowR.Rmd
vignettes/massFlowR.html
vignettes/processing.R
vignettes/processing.Rmd
vignettes/processing.html
vignettes/references.bib
